A Structural Parametrization of the Brain Using Hidden Markov Models-Based Paths in Alzheimer’s Disease
Abstract
The usage of biomedical imaging in the diagnosis of dementia is increasingly widespread. A number of works explore the possibilities of computational techniques and algorithms in what is called computed aided diagnosis. Our work presents an automatic parametrization of the brain structure by means of a path generation algorithm based on hidden Markov models (HMMs). The path is traced using information of intensity and spatial orientation in each node, adapting to the structure of the brain. Each path is itself a useful way to characterize the distribution of the tissue inside the magnetic resonance imaging (MRI) image by, for example, extracting the intensity levels at each node or generating statistical information of the tissue distribution. Additionally, a further processing consisting of a modification of the grey level co-occurrence matrix (GLCM) can be used to characterize the textural changes that occur throughout the path, yielding more meaningful values that could be associated to Alzheimer’s disease (AD), as well as providing a significant feature reduction. This methodology achieves moderate performance, up to 80.3% of accuracy using a single path in differential diagnosis involving Alzheimer-affected subjects versus controls belonging to the Alzheimer’s disease neuroimaging initiative (ADNI).
References
- 1. , Dementia: A Public Health Priority (World Health Organization, 2012). Google Scholar
- 2. , Rician noise attenuation in the wavelet packet transformed domain for brain MRI, Integr. Computer-Aided Eng. 21(2) (2014) 163–175. Crossref, Web of Science, Google Scholar
- 3. , Self-supervised mri tissue segmentation by discriminative clustering, Int. J. Neural Syst. 24 (2014) 1450004. Link, Web of Science, Google Scholar
- 4. , A longitudinal eeg study of alzheimer’s disease progression based on a complex network approach, Int. J. Neural. Syst. 25 (2015) 1550005. Link, Web of Science, Google Scholar
- 5. , Alzheimer’s disease and models of computation: Imaging, classification, and neural models, J. Alzheimers Dis. 7 (2005) 187–199; discussion 255–262. Crossref, Medline, Web of Science, Google Scholar
- 6. , Alzheimer’s disease: Models of computation and analysis of eegs, Clin. EEG Neurosci. 36 (2005) 131–140. Crossref, Medline, Web of Science, Google Scholar
- 7. , A spatio-temporal wavelet-chaos methodology for eeg-based diagnosis of Alzheimer’s disease, Neurosci. Lett. 444 (2008) 190–194. Crossref, Medline, Web of Science, Google Scholar
- 8. , Automated EEG-Based Diagnosis of Neurological Disorders: Inventing the Future of Neurology (CRC Press, Taylor & Francis Group, Boca Raton, FL, 2010). Crossref, Google Scholar
- 9. , New diagnostic eeg markers of the Alzheimer’s disease using visibility graph, J. Neural Transm. (Vienna) 117 (2010) 1099–1109. Crossref, Medline, Web of Science, Google Scholar
- 10. , Fractality and a wavelet-chaos-methodology for eeg-based diagnosis of Alzheimer disease, Alzheimer Disease & Associated Disorders 25(1) (2011) 85–92. Crossref, Medline, Web of Science, Google Scholar
- 11. , Probabilistic neural networks for diagnosis of Alzheimer’s disease using conventional and wavelet coherence, J. Neurosci. Meth. 197 (2011) 165–170. Crossref, Medline, Web of Science, Google Scholar
- 12. , Intrahemispheric, interhemispheric, and distal eeg coherence in Alzheimer’s disease, Clin. Neurophysiol. 122 (2011) 897–906. Crossref, Medline, Web of Science, Google Scholar
- 13. , Wavelet coherence model for diagnosis of Alzheimer disease, Clin. EEG Neurosci. 43 (2012) 268–278. Crossref, Medline, Web of Science, Google Scholar
- 14. , Subjective memory complaints in the elderly: Prevalence and influence of temporal orientation, depression and quality of life in a population-based study in the city of madrid, Aging. Ment. Health 15 (2011) 85–96. Crossref, Medline, Web of Science, Google Scholar
- 15. , Diagnostic value of cerebrospinal fluid a ratios in preclinical Alzheimer’s disease, Alzheimers Res. Ther. 7(1) (2015) 75. Crossref, Medline, Web of Science, Google Scholar
- 16. , Neural correlates of Alzheimer’s disease and mild cognitive impairment: A systematic and quantitative meta-analysis involving 1351 patients, Neuroimage 47 (2009) 1196–1206. Crossref, Medline, Web of Science, Google Scholar
- 17. , An mri-derived definition of mci-to-ad conversion for long-term, automatic prognosis of mci patients, PLoS One 6(10) (2011) e25074. Crossref, Medline, Web of Science, Google Scholar
- 18. , How early can we predict Alzheimer’s disease using computational anatomy?, Neurobiol. Aging. 34 (2013) 2815–2826. Crossref, Medline, Web of Science, Google Scholar
- 19. , Singular spectrum analysis and adaptive filtering enhance the functional connectivity analysis of resting state fmri data, Int. J. Neural. Syst. 24 (2014) 1450010. Link, Web of Science, Google Scholar
- 20. , Combining eeg microstates with fmri structural features for modeling brain activity, Int. J. Neural Syst. 25 (2015) 1550041. Link, Web of Science, Google Scholar
- 21. , A predictive modeling approach to analyze data in eeg-fmri experiments, Int. J. Neural Syst. 25 (2015) 1440008. Link, Web of Science, Google Scholar
- 22. , Discrimination of schizophrenia auditory hallucinators by machine learning of resting-state functional mri, Int. J. Neural Syst. 25 (2015) 1550007. Link, Web of Science, Google Scholar
- 23. , Four subgroups of Alzheimer’s disease based on patterns of atrophy using VBM and a unique pattern for early onset disease, Neuroimage 33 (2006) 17–26. Crossref, Medline, Web of Science, Google Scholar
- 24. , A fast diffeomorphic image registration algorithm, Neuroimage 38 (2007) 95–113. Crossref, Medline, Web of Science, Google Scholar
- 25. , Analyzing 3D images of the brain, Neuroimage 4(3) (1996) S34–S35. Crossref, Medline, Web of Science, Google Scholar
- 26. , Reliability of mri-derived measurements of human cerebral cortical thickness: The effects of field strength, scanner upgrade and manufacturer, Neuroimage 32(1) (2006) 180–194. Crossref, Medline, Web of Science, Google Scholar
- 27. , Intrinsic curvature: A marker of milimeter-scale tangential cortico-cortical connectivity?, Int. J. Neural Syst. 21(5) (2011) 351–366. Link, Web of Science, Google Scholar
- 28. , Statistical Parametric Mapping: The Analysis of Functional Brain Images (Academic Press, Elsevier, London, UK, 2007). Crossref, Google Scholar
- 29. , Functional community analysis of brain: A new approach for eeg-based investigation of the brain pathology, Neuroimage 58 (2011) 401–408. Crossref, Medline, Web of Science, Google Scholar
- 30. , Graph theoretical analysis of organization of functional brain networks in adhd, Clin. EEG Neurosci. 43 (2012) 5–13. Crossref, Medline, Web of Science, Google Scholar
- 31. , Spatiotemporal analysis of relative convergence of eegs reveals differences between brain dynamics of depressive women and men, Clin. EEG Neurosci. 44 (2013) 175–181. Crossref, Medline, Web of Science, Google Scholar
- 32. , Complexity of functional connectivity networks in mild cognitive impairment subjects during a working memory task, Clin. Neurophysiol. 125 (2014) 694–702. Crossref, Medline, Web of Science, Google Scholar
- 33. , Three-dimensional texture analysis of mri brain datasets, IEEE Trans. Med. Imag. 20(5) (2001) 424–433. Crossref, Medline, Web of Science, Google Scholar
- 34. , Robustness of local binary patterns in brain mr image analysis, in 2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (August, 2007). Google Scholar
- 35. , Automated diagnosis of epilepsy using cwt, hos and texture parameters, Int. J. Neural Syst. 23(3) (2013) 1350009. Link, Web of Science, Google Scholar
- 36. , Lvq-SVM based CAD tool applied to structural MRI for the diagnosis of the Alzheimer’s disease, Pattern Recogn. Lett. 34 (2013) 1725–1733. Crossref, Web of Science, Google Scholar
- 37. , Parametrization of textural patterns in 123i-ioflupane imaging for the automatic detection of parkinsonism, Med. Phys. 41(1) (2014) 012502. Crossref, Medline, Web of Science, Google Scholar
- 38. , Pattern classification using principal components of cortical thickness and its discriminative pattern in schizophrenia, Neuroimage 34 (2007) 1405–1415. Crossref, Medline, Web of Science, Google Scholar
- 39. , Fuzzy synchronization likelihood with application to attention-deficit/hyperactivity disorder, Clin. EEG Neurosci. 42 (2011) 6–13. Crossref, Medline, Web of Science, Google Scholar
- 40. , Visibility graph similarity: A new measure of generalized synchronization in coupled dynamic systems, Physica D: Nonlinear Phenomena 241(4) (2012) 326–332. Crossref, Web of Science, Google Scholar
- 41. , Improved visibility graph fractality with application for the diagnosis of autism spectrum disorder, Physica A: Statist. Mech. Appl. 391(20) (2012) 4720–4726. Crossref, Web of Science, Google Scholar
- 42. , Fractality analysis of frontal brain in major depressive disorder, Int. J. Psychophysiol. 85 (2012) 206–211. Crossref, Medline, Web of Science, Google Scholar
- 43. , Fuzzy synchronization likelihood-wavelet methodology for diagnosis of autism spectrum disorder, J. Neurosci. Meth. 211 (2012) 203–209. Crossref, Medline, Web of Science, Google Scholar
- 44. , Spatial component analysis of mri data for alzheimer’s disease diagnosis: A bayesian network approach, Front. Comput. Neurosci. 8 (2014) 156. Crossref, Medline, Web of Science, Google Scholar
- 45. , Projecting mri brain images for the detection of Alzheimer’s disease, Stud. Health Technol. Inform. 207 (2015) 225–233. Google Scholar
- 46. ,
A volumetric radial lbp projection of mri brain images for the diagnosis of Alzheimer’s disease , Artificial Computation in Biology and Medicine (Springer, Berlin, Heidelberg, 2015), pp. 19–28. Crossref, Google Scholar - 47. , Textural features for image classification, IEEE Transactions on Systems, Man Cybernet. 3(6) (1973) 610–621. Crossref, Web of Science, Google Scholar
- 48. , Mr image texture in parkinson’s disease: A longitudinal study, Acta Radiologica 56(1) (2015) 97–104. Crossref, Medline, Web of Science, Google Scholar
- 49. , Reverse engineering a social agent-based hidden markov model — visage, Int. J. Neural Syst. 18(6) (2008) 491–526. Link, Web of Science, Google Scholar
- 50. , 3D statistical neuroanatomical models from 305 mri volumes, in 1993 IEEE Conference Record. Nuclear Science Symposium and Medical Imaging Conference, 1993., IEEE1993, pp. 1813–1817. Google Scholar
- 51. , A new criterion for automatic multilevel thresholding, IEEE Trans. Image Process. 4 (1995) 370–378. Crossref, Medline, Web of Science, Google Scholar
- 52. , Texture analysis of sar sea ice imagery using gray level co-occurrence matrices, IEEE Trans. Geosci. Remote Sens. 37(2) (1999) 780–795. Crossref, Web of Science, Google Scholar
- 53. , An analysis of co-occurrence texture statistics as a function of grey level quantization, Canad. J. Remote Sens. 28(1) (2002) 45–62. Crossref, Web of Science, Google Scholar
- 54. , A voxel-based approach to gray matter asymmetries, Neuroimage 22 (2004) 656–664. Crossref, Medline, Web of Science, Google Scholar
- 55. , Libsvm: A library for support vector machines, ACM Trans. Intell. Syst. Technol. 2 (2011) 1–27. Crossref, Web of Science, Google Scholar
- 56. , A study of cross-validation and bootstrap for accuracy estimation and model selection, in Proc. Int. Joint Conf. AI (1995), pp. 1137–1145. Google Scholar
- 57. , Computer aided diagnosis system for alzheimer disease using brain diffusion tensor imaging features selected by pearson’s correlation, Neurosci. Lett. 502 (2011) 225–229. Crossref, Medline, Web of Science, Google Scholar
- 58. , Diffusion tensor imaging investigations in alzheimer’s disease: The resurgence of white matter compromise in the cortical dysfunction of the aging brain, Neuropsychiatr. Dis. Treat 4 (2008) 737–742. Crossref, Medline, Google Scholar
- 59. , Automated anatomical labeling of activations in spm using a macroscopic anatomical parcellation of the mni mri single-subject brain, Neuroimage 15 (2002) 273–289. Crossref, Medline, Web of Science, Google Scholar
- 60. , Research criteria for the diagnosis of Alzheimer’s disease: Revising the nincds–adrda criteria, The Lancet Neurol. 6 (2007) 734–746. Crossref, Medline, Web of Science, Google Scholar
- 61. , Patterns of temporal lobe atrophy in semantic dementia and Alzheimer’s disease, Ann. Neurol. 49(4) (2001) 433–442. Crossref, Medline, Web of Science, Google Scholar
- 62. , In vivo mapping of gray matter loss with voxel-based morphometry in mild Alzheimer’s disease, Neuroimage 14 (2001) 298–309. Crossref, Medline, Web of Science, Google Scholar
- 63. , Strongly reduced volumes of putamen and thalamus in Alzheimer’s disease: An MRI study, Brain 131 (2008) 3277–3285. Crossref, Medline, Web of Science, Google Scholar
- 64. , Automatic classification of SPECT images of Alzheimer’s disease patients and control subjects, Medical Image Computing and Computer-Assisted Intervention — MICCAI,
Lecture Notes in Computer Science , Vol. 3217 (Springer, Berlin, Heidelberg, 2004), pp. 654–662. Google Scholar
Remember to check out the Most Cited Articles! |
---|
Check out our titles in neural networks today! |