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12: Example of a Scalable and Adaptable Approach for NGS Analyses Leveraging High-Performance Computing

Winthrop P. Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, Little Rock, AR, USA

Winthrop P. Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, Little Rock, AR, USA

Winthrop P. Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, Little Rock, AR, USA

, and

Winthrop P. Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, Little Rock, AR, USA

Abstract:

The following sections are included:

Introduction
Background
New System — Technical Approach
- System design
- Molecular profiling database (MPDB)
- MPDB admin
- Docker
- WES pipeline
- Installation and setup procedure
- Cloud computing
- Regression test sets
Significance
- Deployment on google compute engine
- Internal testing and capabilities
Future Work
Conclusions
Competing Interests
Authors’ Contributions
References